|
|
|
Natural Genetic Engineering: Intelligence & Design in Evolution?
|
| submitted by 6673 10 months ago
|
|
There are many things that I like about James Shapiro's new book "Evolution: A View from the 21st Century" (FT Press Science, 211). He begins the book by saying that it is the creation of novelty, and not selection, that is important in the history of life. In the presence of heritable traits that vary, selection results in the evolution of a population towards an optimal composition of those traits. But selection can only act on changes - and where does this variation come from? Historically, the creation of novelty has been assumed to be the result of random chance or accident. And yet, organisms seem 'designed'. When one examines the data from sequenced genomes, the changes appear NOT to be random or accidental, but one observes that whole chunks of the genome come and go. These 'chunks' often contain functional units, encoding sets of genes that together can perform some specific function. Shapiro argues that what we see in genomes is 'Natural Genetic Engineering', or designed evolution: "Thinking about genomes from an informatics perspective, it is apparent that systems engineering is a better metaphor for the evolutionary process than the conventional view of evolution as a select-biased random walk through limitless space of possible DNA configurations" (page 6).In this review, I will have a look at four topics: 1.) why I think genomics is not the whole story; 2.) my own perspective of E. coli genomics, and how I think it relates to this book; 3.) a brief discussion on "Intelligence, Design, and Evolution"; and finally, 4.) a section "in defense of the central dogma".
|
| Topic: Biology |
|
Add your comment
Please Login or Signup to leave a comment
Related stories
|
|
| Synthetic biology, the bioeconomy, and a societal quandary |
| submitted by joeno 3 months ago - Topic: Biology |
|
Opinions on what synthetic biology actually is range from a natural extension of genetic engineering to a new manufacturing paradigm. It offers, for the first time in the life sciences, rational design and engineering standardisation. It could address problems across a broad spectrum of human con...
|
|
|
|
| Synthetic biology: lessons from engineering yeast MAPK signalling pathways |
| submitted by moreonni 2 months ago - Topic: Biology |
|
All living cells respond to external stimuli and execute specific physiological responses through signal transduction pathways. Understanding the mechanisms controlling signalling pathways is important for diagnosing and treating diseases and for reprogramming cells with desired functions. Althou...
|
|
|
|
| Immunogenetic surveillance of HIV/AIDS |
| submitted by drroe 10 months ago - Topic: Biology |
|
Evolutionary pressure by viruses is most likely responsible for the extraordinary allelic polymorphism of genes encoding class I human leukocyte antigens (HLA) and killer immunoglobulin-like receptors (KIR). Such genetic diversity has functional implications for the immune response to viruses and...
|
|
|
|
| Structure-switching biosensors: inspired by Nature |
| submitted by snihlb 2 years and 11 months ago - Topic: Biology |
|
Chemosensing in nature relies on biomolecular switches, biomolecules that undergo binding-induced changes in conformation or oligomerization to transduce chemical information into specific biochemical outputs. Motivated by the impressive performance of these natural 'biosensors,' which support co...
|
|
|
|
| Engineering input/output nodes in prokaryotic regulatory circuits |
| submitted by imavect 2 years and 10 months ago - Topic: Biology |
|
A large number of prokaryotic regulatory elements have been interfaced artificially with biological circuits that execute specific expression programs. Engineering such circuits involves the association of input/output components that perform discrete signal-transfer steps in an autonomous fashio...
|
|
|
|
| Molecular signatures-based prediction of enzyme promiscuity |
| submitted by comilian444 2 years and 9 months ago - Topic: Biology |
|
Enzyme promiscuity, a property with practical applications in biotechnology and synthetic biology, has been related to the evolvability of enzymes. At the molecular level, several structural mechanisms have been linked to enzyme promiscuity in enzyme families. However, it is at present unclear to...
|
|
|
|